List of Available Modules

Tux Cluster

Directory:

/share/modulefiles/tux

Format:

Software/Version/Compiler

Modules:

amr/0.1.3                    | gcc/4.8.5                    | mindthegap/2.0.1             | regcm/4.4.5.7-intel-openmpi
anaconda2/4.2.0              | gdal/2.0.2-intel             | mira/3.4.1                   | regcm/4.5.0-intel-openmpi
autoconf/2.68                | gerris/131206-intel-mpich    | moses/2.1-intel              | rlecuyer/0.3-4
autoconf/2.68-intel          | gerris/1.3.2-intel-openmpi   | mothur/1.38.1                | rstudio/0.98.1103-intel
autoconf/2.69-intel          | git/2.8.1-intel              | mpich/3.1.4-intel            | samtools/1.0-intel
automake/1.14.1              | gperftools/2.4-intel         | mpich/3.2-intel              | samtools/1.3
automake/1.15-intel          | gradle/2.13                  | mummer/3.23-intel            | samtools/1.3.1-intel
bamtools/2.4.0-intel         | grib_api/1.14.7-intel        | muscle/3.8.31                | samtools/1.3-intel
bamutil/1.0.13-intel         | grib_api/1.15.0-intel        | namd/2.10-intel-openmpi      | shorah/0.8.2
bayescan/2.1                 | gromacs/5.1.2-intel-openmpi  | ncbi-blast/2.3.0             | smalt/0.7.6-intel
bcftools/1.3.1-intel         | gromacs/5.1.4-intel-openmpi  | ncl-ncarg/6.3.0-intel        | snpeff/4.3
beast/1.8.4                  | gsl/2.2-intel                | nco/4.5.2-intel              | soapdenovo/2.04-intel
beast/2.4.2                  | gts/0.7.6-intel              | nco/4.6.1-intel              | sparsehash/2.0.2-intel
bedtools/2.25.0-intel        | hdf4/4.2.11-intel            | netcdf/4.3.3.1-intel         | sqlite/3.10
bedtools/2.26.0              | hdf5/1.8.15-intel            | netcdf/4.4-intel             | stacks/1.40-intel
bioperl/1.6.924              | hdf5/1.8.16                  | numpy/1.12.0-intel           | szip/2.1-intel
biopython/1.65               | hdf5/1.8.16-intel            | nwchem/6.5-intel             | tbb/15.09.28
bison/3.0.4-intel            | htslib/1.0-intel             | openmpi/1.10.2-intel         | tcl/8.6.4
blast/2.4.0                  | htslib/1.3.1-intel           | openmpi/1.8.7-intel          | tcl/8.6.5-intel
boost/1.50-intel             | htslib/1.3-intel             | orca/3.0.3-openmpi           | tcl-threaded/8.5.9
boost/1.58.0-intel           | hypre/2.10.0b-intel-openmpi  | paraview/5.2.0               | theora/1.1.1
boost/1.59                   | hypre/2.10.1-intel-mpich     | pbdmpi/0.2-3                 | tk/8.6.4
boost/1.59-intel             | hypre/2.9.0b-intel-openmpi   | pbsim/1.0.3-intel            | tophat/2.1.1-intel
boost/1.60-intel             | intel/compiler/14.0.3        | pcre/8.37-intel              | trimmomatic/0.33
bowtie/1.1.2                 | intel/mkl/11.0               | perl/5.22.0                  | trimmomatic/0.36
bracken/0.1                  | intltool/0.5.2               | phdf5/1.8.15-intel-mpich     | trinityrs/2.1.1
bwa/0.7.10-intel             | irstlm/5.80.08-intel         | phdf5/1.8.15-intel-openmpi   | trinityrs/2.2.0-intel
bwa/0.7.12                   | iva/1.0.3                    | phdf5/1.8.16-intel-openmpi   | vcftools/0.1.15-intel
bzip2/1.0.6-intel            | jasper/1.900.1-intel         | phdf5/1.8.17-intel-mpich     | velvet/1.2.10-intel
ccam/05.10.16-intel-mpich    | jdk/1.8.0_51                 | picard/2.4.1                 | viquas/1.3
ccam/05.10.16-intel-openmpi  | jellyfish/1.1.11-intel       | picard/2.7.0                 | vivambc/0.2
cdo/1.7.1-intel              | jellyfish/2.2.6-intel        | pnetcdf/1.6.1-intel-openmpi  | vmd/1.9.2-intel
cdo/1.7.2-intel              | kraken/0.10.5-beta           | pnetcdf/1.7.0-intel-mpich    | wps/3.7.1-intel-mpich
charm++/6.6.1-intel-openmpi  | libogg/1.3.2                 | pnetcdf/1.7.1-intel-openmpi  | wps/3.7.1-intel-openmpi
clc-genomics/7.5.1           | libpng/1.6.17-intel          | proj/4.9.2-intel             | wps/3.7-intel-openmpi
cmph/2.0-intel               | libtool/2.4.2-intel          | pyfastaq/3.14.0              | wrf/3.7.1-intel-mpich
cufflinks/2.2.1              | libtool/2.4.6-intel          | python/2.7.11                | wrf/3.7.1-intel-openmpi
curl/7.35.0-intel            | libunwind/1.1-intel          | python/2.7.11-intel          | wrf/3.7-intel-openmpi
dejagnu/1.5.3                | libvorbis/1.3.5              | python/2.7.12-intel          | wrf/3.8.1-intel-mpich
delft3d/5.4.25-intel-openmpi | libx264/15.12.31             | python/2.7.6                 | wrf-chem/3.7-intel-openmpi
expat/2.1.0                  | libxvid/1.3.4                | python/3.4.5-intel           | wrfda/3.7-intel-openmpi
expect/5.45                  | lumpy/0.2.13-intel           | qt/4.8.5                     | wrfplus/3.7-intel-openmpi
fastqc/0.11.5                | m4/1.4.17                    | quasirecomb/1.2              | xmgrace/5.1.25-intel
fastx-tk/0.0.14              | macse/1.02                   | r/2.15.3-intel               | xmlrpc-c/1.33.17-intel
fastx-tk/0.0.14-intel        | maven/3.3.9                  | r/3.2.5-intel                | xz/5.2.2-intel
ferret/7.0-intel             | mdynamix/5.2.7-intel         | r/3.3.2-intel                | yasm/1.3.0
fftw/3.3.4                   | mdynamix/5.2.7-intel-openmpi | readline/6.3                 | zlib/1.2.8
gatk/3.6                     | mindthegap/0.6447            | readline/6.3-intel           | zlib/1.2.8-intel

Duke Cluster

Directory:

/share/modulefiles/duke

Format:

Software/Version/Compiler

Modules:

amd-app-sdk/3.0.130       | expect/5.45               | lis/1.5.57-gcc-openmpi    | pnetcdf/1.6.1-gcc-openmpi
amr/0.1.3                 | falcon/0.3.0              | lumpy/0.2.13              | pnetcdf/1.7.1-gcc-mvapich
anaconda2/4.2.0           | fastqc/0.11.5             | m4/1.4.17                 | python/1.65
autoconf/2.69-gcc         | fastx-tk/0.0.14           | m4/1.4.17-gcc             | python/2.7.11
automake/1.14.1           | fdk-aac/0.1.4-gcc         | macse/1.02                | python/2.7.11-gcc
automake/1.15-gcc         | fftw/3.3.4                | mafft/7.305-gcc           | python/2.7.6
bamutil/1.0.13-gcc        | gatk/3.6                  | matlab/v85                | qt/4.8.5
bayescan/2.1              | gcc/4.8.5                 | maven/3.3.9               | r/3.2.5-gcc
bcftools/1.0-gcc          | geomatica/2016-gcc        | mindthegap/0.6447         | r/3.3.0-gcc
bcftools/1.3.1-gcc        | gerris/1.3.2-gcc-mpich    | mindthegap/2.0.1          | readline/6.3
beagle/2.1.2-gcc          | gerris/1.3.2-gcc-openmpi  | mira/3.4.1                | readline/6.3-gcc
beast/1.8.4               | glog/0.3.3-gcc            | mira/3.9.18-gcc           | regcm/4.5.0-gcc-openmpi
beast/2.4.2               | gperftools/2.4-gcc        | mira-assembler/3.9.18-gcc | rstudio/0.98.1103-gcc
bedtools/2.25.0-gcc       | gradle/2.13               | moses/2.1-gcc             | samtools/1.0-gcc
bedtools/2.26.0           | gsl/2.2-gcc               | mothur/1.38.1             | samtools/1.3
bioperl/1.6.924           | gts/0.7.6-gcc             | mpich/3.1.4-gcc           | samtools/1.3.1-gcc
biopython/1.65            | hdf4/4.2.11-gcc           | mummer/3.23-gcc           | snpeff/4.3
blas-lapack/3.6.0-gcc     | hdf5/1.10.0-gcc           | muscle/3.8.31             | sqlite/3.10
blast/2.3.0               | hdf5/1.8.15-gcc           | mvapich/2.2b-gcc          | tbb/15.09.28
blast/2.4.0               | hdf5/1.8.15-gcc-openmpi   | namd/2.10-gcc-openmpi     | tcl/8.5.9
boost/1.50-gcc            | hdf5/1.8.16               | namd/2.11-gcc-cuda        | tcl/8.6.4
boost/1.59                | hdf5/1.8.16-gcc           | namd/2.11-gcc-mvapich     | tcl/8.6.5-gcc
boost/1.59-gcc            | hdf5/1.8.16-gcc-mvapich   | ncbi-blast/2.3.0          | tcl-threaded/8.5.9
boost/1.60-gcc            | htslib/1.0-gcc            | netcdf/1.6.1-gcc-openmpi  | theora/1.1.1
boost/1.60-gcc-mvapich    | htslib/1.3.1-gcc          | netcdf/1.7.1-gcc-mvapich  | tk/0.0.14
bowtie/1.1.2              | hypre/2.10.1-gcc-mpich    | netcdf/4.3.3.1-gcc        | tk/3.6.0
bracken/0.1               | hypre/2.10.1-gcc-openmpi  | netcdf/4.4.1.1-gcc        | tk/8.6.4
bwa/0.7.10-gcc            | irstlm/5.80.08-gcc        | netcdf/4.4-gcc            | tophat/2.1.1
bwa/0.7.12                | jasper/1.900.1-gcc        | openblas/0.2.18-gcc       | trimmomatic/0.33
bzip/1.0.6-gcc            | jdk/1.8.0_51              | opencv/2.4.10-gcc         | trimmomatic/0.36
bzip2/1.0.6-gcc           | jellyfish/1.1.11-gcc      | openmpi/1.10.0-amd-gcc    | trinityrs/2.1.1
ccam/05.10.16-gcc-mvapich | jellyfish/2.2.6-gcc       | openmpi/1.10.0-gcc        | vcftools/0.1.13-gcc
charm++/6.6.1-gcc-openmpi | kraken/0.10.5-beta        | openmpi/1.10.2-gcc        | vcftools/0.1.15-gcc
charm++/6.7-gcc           | libffi/3.2.1-gcc          | openssl/1.0.2-gcc         | wps/3.7.1-gcc-mvapich
charm++/6.7-gcc-mvapich   | libogg/1.3.2              | pcre/8.37-gcc             | wrf/3.7.1-gcc-mvapich
cmph/2.0-gcc              | libtool/2.4.6-gcc         | perl/1.6.924              | xmlrpc-c/1.33.17-gcc
cuda/7.5.18-gcc           | libunwind/1.1-gcc         | perl/5.22.0               | xz/5.2.2-gcc
cufflinks/2.2.1           | libvorbis/1.3.5           | phdf5/1.8.15-gcc-openmpi  | yasm/1.3.0
curl/7.35.0-gcc           | libx264/15.12.31          | phdf5/1.8.16-gcc-mvapich  | zlib/1.2.8
dejagnu/1.5.3             | libxvid/1.3.4             | picard/2.4.1              | zlib/1.2.8-gcc
expat/2.1.0               | lis/1.5.57-gcc-mpich      | picard/2.7.0